Once you've installed Flip, open a command prompt (CMD) and reach the following path contained inside the Flip installation directory, usually: cd C:Program Files (x86)AtmelFlip 3.4.5bin but it depends where the Atmel software is installed. Flip supplies a utility called batchisp that you'll use to make the upgrade. Use the Flip software provided by Atmel to program the device using the DFU mode (Device Firmware Update).
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